PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 854aa    MW: 94615.5 Da    PI: 9.3122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06163185326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     t +Cr+f + G C++G+ C+F H+
  XP_012571936.1 163 TQPCRDFPA-GKCRRGSLCNFLHD 185
                     789******.*************7 PP

2zf-CCCH21.54.1e-07224245426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C +fa+ G C+ G++CkF H+
  XP_012571936.1 224 EACINFAK-GRCRMGASCKFVHD 245
                     78******.*************7 PP

3zf-CCCH20.68e-07289309526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ffa  G C+ G  C+FaH+
  XP_012571936.1 289 PCKFFAN-GNCRNGKYCRFAHD 309
                     8**8888.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.037160187IPR000571Zinc finger, CCCH-type
SMARTSM003560.01160186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5163186IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4163185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098220247IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4221246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5224246IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4224245IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5284310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535284311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6286309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5289314IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4289309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MSGTDRKRSS KWDLGDELEF SPGSKQMRPG WSSADVAGRN SSKRAYSQGN DKLRPVMGFS  60
SKEFSGGRGS NKDGDLNKDH RVVDTRREWD TDGNYSKKMS PWPEERKQQR HSQSPNNGWS  120
RSSRSRSRSP PRGFRSSRSR SPRGFRWDSG VDDRKRMRVG GSTQPCRDFP AGKCRRGSLC  180
NFLHDDNQNH DNSWESKHWE DGAPRYSAPH ESVDHSLKSG RSNEACINFA KGRCRMGASC  240
KFVHDDDSDG YGKVSMDEFT REREINRRHR DSSFEQGGGH APNRTSDTPC KFFANGNCRN  300
GKYCRFAHDK QACRSPNRRL RDDRRASNPS GDRQMLDRRK SSNSISPDRR LKDDKRGLDG  360
DVADPDIVGD SPKQNDTVSV TDTAKLIENK SGNVGATERG STAWPMTDGW DHGLDKSRLH  420
GKPSISSDKK EADRWIAENT GANMHGSQPI GTDIWPGDAE MSPDWNYRMG SSSHMEEPGQ  480
NKHGISQGGT YLSTSEHSKI QVAPGQGINQ ITQNVNPLHT SSSHAIGQSQ VAVPILPSRE  540
GIVDAMHSQE VCTEKKYTME PNIMDPGLSH VSSRNPSTQN EVSNEQLAQL TNLSASLAHI  600
LGAGQQLPQL YAALNSHDLK DSPSLAKTQV PAIPVSIACF KPDPAVGLPK PYDPMHDSIE  660
QKNADASGVL PAIPQSKNIA EVETLSQLSK SGRQNCGDSI KAASSEFVKS DNLIQLQPGQ  720
NTVVNKDNNE EVAKERQSSQ DGHHKSTKEN GPQNMDQNGG PDDANKAKDM KGIRAFKFAL  780
AEFVKELLKP TWKEGQITKE DYKTIVKKVV DKVTGTMQGA NIPQTQEKID HYLSFSKPKL  840
NKLVQAYVEK VQKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502920.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
RefseqXP_012571935.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
RefseqXP_012571936.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBLV7AVN20.0V7AVN2_PHAVU; Uncharacterized protein
STRINGGLYMA04G39221.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-12C3H family protein